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A comparison between internal protein nanoenvironments of ?-helices and beta-sheets. Author(s): MAZONI, I.; SALIM, J. A.; MORAES, F. R. de; BORRO, L.; NESHICH, G. In this paper we would first like to address a full characterization of the nanoenvironment found at beta sheet locations and then compare those characteristics with the ones we already published for... ... Repository: BDPA Publication year: 2020
Binding affinity prediction using a nonparametric regression model based on physicochemical and structural descriptors of the nano-environment for protein-ligand interactions. Author(s): BORRO, L.; YANO, I. H.; MAZONI, I.; NESHICH, G. We propose a new empirical scoring function for binding affinity prediction modeled based on physicochemical and structural descriptors that characterize the nano-environment that encompass both ligan... ... Repository: BDPA Publication year: 2016
Computational biology tools in design of an agrochemical against Xylella fastidiosa. Author(s): FULAZ, S. F.; CABRINI, F.; TASIC, L.; BORRO, L.; NESHICH, G. Xylella fastidiosa is a Gram-negative, non-flagellated bacterium that causes CVC in citrus and Pierce?s disease in grapevines. The CVC affects 40% of the 200 million orange trees in São Paulo state. I... ... Repository: BDPA Publication year: 2015
Biologia computacional molecular e suas aplicações na agricultura. Author(s): JARDINE, J. G.; NESHICH, I. A. P.; MAZONI, I.; YANO, I. H.; MORAES, F. R. de; SALIM, J. A.; BORRO, L.; NISHIMURA, L. S.; NESHICH, G. Biologia computacional, uma nova ciência aplicada. Desenho racional de drogas, fármacos e agroquímicos. Biologia computacional na Embrapa. Repository: BDPA Publication year: 2014
Comparison of the amino acids co-evolution and the correlated structure descriptors. Author(s): MAZONI, I.; FALCÃO, P. R. K.; YAMAGISHI, M.; BORRO, L.; JARDINE, J. G.; SANTOS, E. H. dos; OLIVEIRA, S. R. de M.; NESHICH, G.; NARCISO, M. G. Short Abstract: The AA Co-evolution is a very powerful method of identifying those critical residues which are responsible for maintaining the minimum information for the specific function. By compari... ... Repository: BDPA Publication year: 2006
MSSP: simultaneous comparison of the same structure descriptor for different protein structures. Author(s): MAZONI, I.; KUSER, P.; YAMAGISHI, M.; BORRO, L.; JARDINE, J.; SANTOS, E. H. dos; OLIVEIRA, S. R. de M.; NESHICH, G. Short Abstract: The Multiple Structures - Single Parameter STING module allows a user to compare variety of structure parameters from different protein structures in a simple yet intuitive 2D pilot. T... ... Repository: BDPA Publication year: 2006

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